P5-eval - How to Download and Install on Mac OS X
Friday the 19th of March, 2010

    p5-eval  most recent diff


    version

      View the most recent changes for the p5-eval port at: p5-eval.darwinports.com/diff
      Scroll down toward the bottom of the page to get installation instructions for p5-eval.
      The raw portfile for p5-eval is located here:
      http://p5-eval.darwinports.com/dports/perl/p5-eval/Portfile
      Find related portfiles with the unique DarwinPorts.com search feature.
      Check for any related Fink projects here: pdb.finkproject.org/pdb/package.php/p5-eval


      The p5-eval Portfile 56410 2009-08-27 06:30:44Z blb macports.org $

      PortSystem 1.0
      PortGroup perl5 1.0
      perl5.setup eval 2.2.8
      Category: perl biology
      Maintainers: cse.wustl.edu:rpz
      Description: Perl module for parameter estimation with hidden Markov models.
      Long Description: iPE is parameter estimation software for generalized hidden Markov models. For information and documentation, see http://genes.cse.wustl.edu.

      Homepage: http://mblab.wustl.edu
      Master Sites: http://mblab.wustl.edu/software/download/

      use_configure no

      build {}
      test {}

      destroot.cmd {}
      destroot {
      set installvendorlib [perl5.extract_config installvendorlib]
      file mkdir ${destroot}${installvendorlib}
      xinstall -m 0644 -W ${worksrcpath} Eval.pm GTF.pm ${destroot}${installvendorlib}
      xinstall -m 0755 -W ${worksrcpath} combine_eval_reports.pl eval.pl evaluate_gtf.pl filter_badlist.pl filter_gtfs.pl get_distribution.pl get_general_stats.pl get_overlap_stats.pl gff3_to_gtf.pl graph_gtfs.pl make_intron_lenght_vs_performance_graph.pl validate_gtf.pl validate_splice_sites.pl ${destroot}${prefix}/bin
      }


      Platform: darwin

      Checksums: md5 9a28468ac7fc801abfa2fa7979537e17


    If you haven't already installed Darwin Ports, you can find easy instructions for doing so at the main Darwin Ports page.

    Once Darwin Ports has been installed, in a terminal window and while online, type the following and hit return:


      %  cd /opt/local/bin/portslocation/dports/p5-eval
      % sudo port install p5-eval
      Password:
    You will then be prompted for your root password, which you should enter. You may have to wait for a few minutes while the software is retrieved from the network and installed for you. Y ou should see something that looks similar to:

      ---> Fetching p5-eval
      ---> Verifying checksum for p5-eval
      ---> Extracting p5-eval
      ---> Configuring p5-eval
      ---> Building p5-eval with target all
      ---> Staging p5-eval into destroot
      ---> Installing p5-eval
    - Make sure that you do not close the terminal window while Darwin Ports is working. Once the software has been installed, you can find further information about using p5-eval with these commands:
      %  man p5-eval
      % apropos p5-eval
      % which p5-eval
      % locate p5-eval

     Where to find more information:

    Darwin Ports



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